TRANSPIRE
latest
The Basics:
TRANSPIRE Installation
Steps required to run an analysis with TRANSPIRE
Examples and tutorials:
Importing and manipulating data for TRANSPIRE analysis
Hyperparameter optimization
Final model fitting
Post-processing of TRANSPIRE results
API:
TRANSPIRE API
TRANSPIRE
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
E
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
S
|
T
|
U
|
X
|
Y
A
acc (TRANSPIRE.training.ProgressTracker attribute)
add_markers() (in module TRANSPIRE.data.import_data)
alpha (TRANSPIRE.go_enrichment.GOAnalyzer attribute)
B
build_model() (in module TRANSPIRE.training)
C
compute_cutoff() (in module TRANSPIRE.performance)
compute_distance() (in module TRANSPIRE.cotranslocation)
compute_fpr() (in module TRANSPIRE.cotranslocation)
(in module TRANSPIRE.performance)
compute_inducing() (in module TRANSPIRE.training)
E
elbo (TRANSPIRE.training.ProgressTracker attribute)
eval_report() (in module TRANSPIRE.performance)
extract_true_neg() (in module TRANSPIRE.cotranslocation)
extract_true_pos() (in module TRANSPIRE.cotranslocation)
G
get_enrichment() (TRANSPIRE.go_enrichment.GOAnalyzer method)
get_interactions() (TRANSPIRE.cotranslocation.GetSTRINGInteractions method)
get_mapping() (in module TRANSPIRE.utils)
GetSTRINGInteractions (class in TRANSPIRE.cotranslocation)
GOAnalyzer (class in TRANSPIRE.go_enrichment)
group_organelles() (in module TRANSPIRE.utils)
I
IDs (TRANSPIRE.go_enrichment.GOAnalyzer attribute)
L
load_CORUM() (in module TRANSPIRE.data.import_data)
load_data() (in module TRANSPIRE.data.import_data)
load_organelle_markers() (in module TRANSPIRE.data.import_data)
load_predictions() (in module TRANSPIRE.data.import_data)
lookup() (in module TRANSPIRE.utils)
M
m (TRANSPIRE.training.ProgressTracker attribute)
make_translocations() (in module TRANSPIRE.data.generate_translocations)
map_binary() (in module TRANSPIRE.utils)
map_identifiers_string() (TRANSPIRE.cotranslocation.GetSTRINGInteractions method)
N
None (TRANSPIRE.cotranslocation.GetSTRINGInteractions attribute)
O
obodag (TRANSPIRE.go_enrichment.GOAnalyzer attribute)
P
ProgressTracker (class in TRANSPIRE.training)
Q
query() (TRANSPIRE.cotranslocation.GetSTRINGInteractions method)
S
sample_balanced() (in module TRANSPIRE.utils)
slim() (TRANSPIRE.go_enrichment.GOAnalyzer method)
species (TRANSPIRE.go_enrichment.GOAnalyzer attribute)
study (TRANSPIRE.go_enrichment.GOAnalyzer attribute)
T
to_query_string() (TRANSPIRE.cotranslocation.GetSTRINGInteractions method)
train_test_validate_split() (in module TRANSPIRE.utils)
TRANSPIRE.cotranslocation (module)
TRANSPIRE.data.generate_translocations (module)
TRANSPIRE.data.import_data (module)
TRANSPIRE.go_enrichment (module)
TRANSPIRE.performance (module)
TRANSPIRE.training (module)
TRANSPIRE.utils (module)
TRANSPIRE.visualization (module)
U
uniprot_mapping_service() (in module TRANSPIRE.utils)
update() (TRANSPIRE.training.ProgressTracker method)
X
X (TRANSPIRE.training.ProgressTracker attribute)
Y
y (TRANSPIRE.training.ProgressTracker attribute)